Index

_

_add_dt_terms() (in module opencmp.solvers.time_integration_schemes) _add_multiple_components() (opencmp.models.multi_component_ins.MultiComponentINS method) _add_multiple_parameters() (opencmp.models.base_model.Model method) _apply_boundary_conditions() (opencmp.solvers.base_solver.Solver method) _apply_dynamics_equation() (opencmp.controllers.base_controller.Controller method) _assemble() (opencmp.solvers.base_solver.Solver method) _calculate_local_error() (opencmp.solvers.adaptive_transient_solvers.base_adaptive_transient_multistep.BaseAdaptiveTransientMultiStepSolver method) (opencmp.solvers.adaptive_transient_solvers.base_adaptive_transient_RK.BaseAdaptiveTransientRKSolver method) _construct_fes() (opencmp.models.base_model.Model method) _construct_linearization_terms() (opencmp.models.base_model.Model method) _contruct_fes_helper() (opencmp.models.ins.INS method) _convert_dict_entries_to_list() (in module opencmp.config_functions.controller_functions) _create_linear_and_bilinear_forms() (opencmp.solvers.base_solver.Solver method) _create_preconditioners() (opencmp.solvers.base_solver.Solver method) _create_test_and_trial_functions() (opencmp.models.base_model.Model method) _define_bc_types() (opencmp.models.base_model.Model method) _define_model_components() (opencmp.models.base_model.Model method) _define_model_local_error_components() (opencmp.models.base_model.Model method) _define_num_weak_forms() (opencmp.models.base_model.Model method) _define_time_derivative_components() (opencmp.models.base_model.Model method) _divergence() (in module opencmp.helpers.error) _ds() (opencmp.models.base_model.Model method) _dt_for_next_time_to_hit() (opencmp.solvers.base_solver.Solver method) _error_derivative() (opencmp.controllers.pid_controller.PID method) _error_integral() (opencmp.controllers.pid_controller.PID method) _evaluate_control_variables() (opencmp.controllers.base_controller.Controller method) _facet_jumps() (in module opencmp.helpers.error)

_find_rel_path_for_file() (opencmp.config_functions.base_config_functions.ConfigFunctions method) _generate_BC_masks() (opencmp.diffuse_interface.dim.DIM method) _generate_DIM_mesh() (opencmp.diffuse_interface.dim.DIM method) _generate_phase_field() (opencmp.diffuse_interface.dim.DIM method) _get_wind() (opencmp.models.ins.INS method) _l_1() (in module opencmp.helpers.error) _l_2() (in module opencmp.helpers.error) _l_inf() (in module opencmp.helpers.error) _load_and_apply_initial_conditions() (opencmp.solvers.base_solver.Solver method) _load_bc_parameters() (opencmp.diffuse_interface.dim.DIM method) _load_nonconformal_parameters() (opencmp.diffuse_interface.dim.DIM method) _load_param() (opencmp.config_functions.expanded_config_parser.ConfigParser method) _log_timestep() (opencmp.solvers.base_solver.Solver method) _post_init() (opencmp.models.base_model.Model method) _pre_init() (opencmp.models.base_model.Model method) _re_assemble() (opencmp.solvers.base_solver.Solver method) _set_model_parameters() (opencmp.models.base_model.Model method) _single_solve() (opencmp.solvers.base_solver.Solver method) _sol_to_vtu() (in module opencmp.helpers.post_processing) _solve() (opencmp.solvers.base_solver.Solver method) _split_gfu() (in module opencmp.solvers.time_integration_schemes) _startup() (opencmp.solvers.base_solver.Solver method) _surface_traction() (in module opencmp.helpers.error) _update_bcs() (opencmp.solvers.base_solver.Solver method) _update_preconditioners() (opencmp.solvers.base_solver.Solver method) _update_time_of_next_action() (opencmp.controllers.base_controller.Controller method) _update_time_step() (opencmp.solvers.base_solver.Solver method)

A

accept_stationary_solution() (opencmp.models.base_model.Model method) (opencmp.models.ins.INS method) (opencmp.models.poisson.Poisson method) (opencmp.models.stokes.Stokes method) adaptive_IMEX_pred() (in module opencmp.solvers.time_integration_schemes) AdaptiveIMEX (class in opencmp.solvers.adaptive_transient_solvers.adaptive_IMEX) AdaptiveThreeStep (class in opencmp.solvers.adaptive_transient_solvers.adaptive_three_step)

AdaptiveTwoStep (class in opencmp.solvers.adaptive_transient_solvers.adaptive_two_step) allows_explicit_schemes() (opencmp.models.base_model.Model static method) (opencmp.models.ins.INS static method) (opencmp.models.poisson.Poisson static method) angle_between() (in module opencmp.diffuse_interface.mesh_helpers) apply_dirichlet_bcs_to() (opencmp.models.base_model.Model method) avg() (in module opencmp.helpers.dg)

B

BaseAdaptiveTransientMultiStepSolver (class in opencmp.solvers.adaptive_transient_solvers.base_adaptive_transient_multistep)

BaseAdaptiveTransientRKSolver (class in opencmp.solvers.adaptive_transient_solvers.base_adaptive_transient_RK) BCFunctions (class in opencmp.config_functions.boundary_conditions)

C

calc_barycentric() (in module opencmp.diffuse_interface.mesh_helpers) calc_curvature_3d() (in module opencmp.diffuse_interface.mesh_quality_metrics) calc_error() (in module opencmp.helpers.error) calc_unit_normal() (in module opencmp.diffuse_interface.mesh_helpers) calculate_control_action() (opencmp.controllers.base_controller.Controller method) (opencmp.controllers.pid_controller.PID method) calculate_control_all_actions() (opencmp.controllers.controller_group.ControllerGroup method) can_import_module() (in module opencmp.helpers.misc) CNLF() (in module opencmp.solvers.time_integration_schemes) ConfigFunctions (class in opencmp.config_functions.base_config_functions) ConfigParser (class in opencmp.config_functions.expanded_config_parser) construct_and_run_solver() (opencmp.models.base_model.Model method) construct_bilinear_time_coefficient() (opencmp.models.base_model.Model method) (opencmp.models.ins.INS method) (opencmp.models.multi_component_ins.MultiComponentINS method) (opencmp.models.poisson.Poisson method) (opencmp.models.stokes.Stokes method) construct_bilinear_time_ODE() (opencmp.models.base_model.Model method) (opencmp.models.ins.INS method) (opencmp.models.multi_component_ins.MultiComponentINS method) (opencmp.models.poisson.Poisson method) (opencmp.models.stokes.Stokes method)

construct_gfu() (opencmp.helpers.post_processing.PhaseFieldModelMimic method) (opencmp.models.base_model.Model method) construct_identity_mat() (in module opencmp.helpers.ngsolve_) construct_imex_explicit() (opencmp.models.base_model.Model method) (opencmp.models.ins.INS method) (opencmp.models.multi_component_ins.MultiComponentINS method) (opencmp.models.poisson.Poisson method) (opencmp.models.stokes.Stokes method) construct_linear() (opencmp.models.base_model.Model method) (opencmp.models.ins.INS method) (opencmp.models.multi_component_ins.MultiComponentINS method) (opencmp.models.poisson.Poisson method) (opencmp.models.stokes.Stokes method) construct_preconditioners() (opencmp.models.base_model.Model method) Controller (class in opencmp.controllers.base_controller) ControllerFunctions (class in opencmp.config_functions.controller_functions) ControllerGroup (class in opencmp.controllers.controller_group) convert_str_to_dict() (in module opencmp.config_functions.load_config) crank_nicolson() (in module opencmp.solvers.time_integration_schemes) create_and_load_gridfunction_from_file() (in module opencmp.helpers.io) crop_to_mesh_bounds() (in module opencmp.diffuse_interface.mesh_helpers)

D

DIM (class in opencmp.diffuse_interface.dim)

E

euler_IMEX() (in module opencmp.solvers.time_integration_schemes) eval_item() (in module opencmp.config_functions.parse_arithmetic)

eval_python() (in module opencmp.config_functions.parse_arithmetic) evaluate_arith_stack() (in module opencmp.config_functions.parse_arithmetic) explicit_euler() (in module opencmp.solvers.time_integration_schemes)

G

get_binary_2d() (in module opencmp.diffuse_interface.interface) get_binary_3d() (in module opencmp.diffuse_interface.interface) get_chords_2d() (in module opencmp.diffuse_interface.mesh_quality_metrics) get_chords_3d() (in module opencmp.diffuse_interface.mesh_quality_metrics) get_control_variables() (opencmp.config_functions.controller_functions.ControllerFunctions method) get_controller() (in module opencmp.controllers.misc) get_dict() (opencmp.config_functions.expanded_config_parser.ConfigParser method) get_DIM_gridfunctions() (opencmp.diffuse_interface.dim.DIM method) get_item() (opencmp.config_functions.expanded_config_parser.ConfigParser method) get_list() (opencmp.config_functions.expanded_config_parser.ConfigParser method) get_manipulated_variables() (opencmp.config_functions.controller_functions.ControllerFunctions method) get_mesh_boundary_2d() (in module opencmp.diffuse_interface.mesh_helpers) get_mesh_boundary_3d() (in module opencmp.diffuse_interface.mesh_helpers) get_mesh_boundary_from_conformal_2d() (in module opencmp.diffuse_interface.mesh_helpers) get_mesh_edges_vertices_3d() (in module opencmp.diffuse_interface.mesh_helpers) get_model_class() (in module opencmp.models.misc)

get_Netgen_nonconformal() (in module opencmp.diffuse_interface.mesh_helpers) get_new_bounds() (in module opencmp.diffuse_interface.mesh_helpers) get_one_level_dict() (opencmp.config_functions.expanded_config_parser.ConfigParser method) get_phi() (in module opencmp.diffuse_interface.interface) get_radius_curvature_2d() (in module opencmp.diffuse_interface.mesh_quality_metrics) get_radius_curvature_3d() (in module opencmp.diffuse_interface.mesh_quality_metrics) get_solver_class() (in module opencmp.solvers.misc) get_special_functions() (in module opencmp.helpers.ngsolve_) get_stl_faces() (in module opencmp.diffuse_interface.mesh_helpers) get_three_level_dict() (opencmp.config_functions.expanded_config_parser.ConfigParser method) get_time_for_next_two_control_actions() (opencmp.controllers.controller_group.ControllerGroup method) get_trial_and_test_functions() (opencmp.models.base_model.Model method) get_two_level_dict() (opencmp.config_functions.expanded_config_parser.ConfigParser method) grad_avg() (in module opencmp.helpers.dg) grad_jump() (in module opencmp.helpers.dg) gridfunction_rigid_body_motion() (in module opencmp.helpers.ngsolve_)

H

h_convergence() (in module opencmp.helpers.error_analysis)

H_s() (in module opencmp.helpers.math) H_t() (in module opencmp.helpers.math)

I

ICFunctions (class in opencmp.config_functions.initial_conditions) implicit_euler() (in module opencmp.solvers.time_integration_schemes)

index_sublist() (in module opencmp.diffuse_interface.mesh_helpers) INS (class in opencmp.models.ins) inverse_rigid_body_motion() (in module opencmp.helpers.ngsolve_)

J

jump() (in module opencmp.helpers.dg)

L

line_segment_face_intersect_3d() (in module opencmp.diffuse_interface.mesh_quality_metrics) line_segments_intersect_2d() (in module opencmp.diffuse_interface.mesh_quality_metrics) load_bc_gridfunctions() (opencmp.config_functions.boundary_conditions.BCFunctions method)

load_coefficientfunction_into_gridfunction() (in module opencmp.config_functions.load_config) load_mesh() (in module opencmp.helpers.io) load_mesh_fes() (opencmp.models.base_model.Model method) load_param_simple() (opencmp.config_functions.expanded_config_parser.ConfigParser method)

M

mean() (in module opencmp.helpers.error) mean_to_zero() (in module opencmp.helpers.error) merge_bc_dict() (in module opencmp.helpers.misc) Model (class in opencmp.models.base_model) ModelFunctions (class in opencmp.config_functions.model_functions) module opencmp opencmp.config_functions opencmp.config_functions.base_config_functions opencmp.config_functions.boundary_conditions opencmp.config_functions.controller_functions opencmp.config_functions.expanded_config_parser opencmp.config_functions.initial_conditions opencmp.config_functions.load_config opencmp.config_functions.model_functions opencmp.config_functions.parse_arithmetic opencmp.config_functions.reference_solutions opencmp.controllers opencmp.controllers.base_controller opencmp.controllers.controller_group opencmp.controllers.misc opencmp.controllers.pid_controller opencmp.diffuse_interface opencmp.diffuse_interface.dim opencmp.diffuse_interface.interface opencmp.diffuse_interface.mesh_helpers opencmp.diffuse_interface.mesh_quality_metrics opencmp.helpers opencmp.helpers.dg opencmp.helpers.error opencmp.helpers.error_analysis opencmp.helpers.io opencmp.helpers.math opencmp.helpers.mesh opencmp.helpers.misc opencmp.helpers.ngsolve_ opencmp.helpers.post_processing opencmp.helpers.saving opencmp.models opencmp.models.base_model opencmp.models.ins opencmp.models.misc opencmp.models.multi_component_ins opencmp.models.poisson opencmp.models.stokes opencmp.run opencmp.solvers opencmp.solvers.adaptive_transient_solvers opencmp.solvers.adaptive_transient_solvers.adaptive_IMEX opencmp.solvers.adaptive_transient_solvers.adaptive_three_step opencmp.solvers.adaptive_transient_solvers.adaptive_two_step opencmp.solvers.adaptive_transient_solvers.base_adaptive_transient_multistep opencmp.solvers.adaptive_transient_solvers.base_adaptive_transient_RK opencmp.solvers.base_solver opencmp.solvers.misc opencmp.solvers.stationary opencmp.solvers.time_integration_schemes opencmp.solvers.transient_multistep opencmp.solvers.transient_RK

move_vertex() (in module opencmp.diffuse_interface.mesh_helpers) MultiComponentINS (class in opencmp.models.multi_component_ins)

N

ngsolve_to_numpy() (in module opencmp.helpers.ngsolve_) nonconformal_subdomain_2d() (in module opencmp.diffuse_interface.interface) nonconformal_subdomain_3d() (in module opencmp.diffuse_interface.interface)

nondimensionalize_mesh_file() (in module opencmp.helpers.mesh) nondimensionlize_loaded_mesh() (in module opencmp.helpers.mesh) norm() (in module opencmp.helpers.error) numpy_to_ngsolve() (in module opencmp.helpers.ngsolve_)

O

opencmp module opencmp.config_functions module opencmp.config_functions.base_config_functions module opencmp.config_functions.boundary_conditions module opencmp.config_functions.controller_functions module opencmp.config_functions.expanded_config_parser module opencmp.config_functions.initial_conditions module opencmp.config_functions.load_config module opencmp.config_functions.model_functions module opencmp.config_functions.parse_arithmetic module opencmp.config_functions.reference_solutions module opencmp.controllers module opencmp.controllers.base_controller module opencmp.controllers.controller_group module opencmp.controllers.misc module opencmp.controllers.pid_controller module opencmp.diffuse_interface module opencmp.diffuse_interface.dim module opencmp.diffuse_interface.interface module opencmp.diffuse_interface.mesh_helpers module opencmp.diffuse_interface.mesh_quality_metrics module opencmp.helpers module opencmp.helpers.dg module opencmp.helpers.error module opencmp.helpers.error_analysis module opencmp.helpers.io module opencmp.helpers.math module

opencmp.helpers.mesh module opencmp.helpers.misc module opencmp.helpers.ngsolve_ module opencmp.helpers.post_processing module opencmp.helpers.saving module opencmp.models module opencmp.models.base_model module opencmp.models.ins module opencmp.models.misc module opencmp.models.multi_component_ins module opencmp.models.poisson module opencmp.models.stokes module opencmp.run module opencmp.solvers module opencmp.solvers.adaptive_transient_solvers module opencmp.solvers.adaptive_transient_solvers.adaptive_IMEX module opencmp.solvers.adaptive_transient_solvers.adaptive_three_step module opencmp.solvers.adaptive_transient_solvers.adaptive_two_step module opencmp.solvers.adaptive_transient_solvers.base_adaptive_transient_multistep module opencmp.solvers.adaptive_transient_solvers.base_adaptive_transient_RK module opencmp.solvers.base_solver module opencmp.solvers.misc module opencmp.solvers.stationary module opencmp.solvers.time_integration_schemes module opencmp.solvers.transient_multistep module opencmp.solvers.transient_RK module order_ccw() (in module opencmp.diffuse_interface.mesh_helpers) orient_2d() (in module opencmp.diffuse_interface.mesh_helpers) orient_3d() (in module opencmp.diffuse_interface.mesh_helpers)

P

p_convergence() (in module opencmp.helpers.error_analysis) parse_str() (in module opencmp.config_functions.load_config) parse_to_arith() (in module opencmp.config_functions.parse_arithmetic)

PhaseFieldModelMimic (class in opencmp.helpers.post_processing) PID (class in opencmp.controllers.pid_controller) Poisson (class in opencmp.models.poisson)

R

ramp_cos() (in module opencmp.helpers.math) ray_trace_2d() (in module opencmp.diffuse_interface.mesh_helpers) re_parse() (opencmp.config_functions.base_config_functions.ConfigFunctions method) RefSolFunctions (class in opencmp.config_functions.reference_solutions) reorder_vertices_2d() (in module opencmp.diffuse_interface.mesh_helpers) reset_model() (opencmp.solvers.adaptive_transient_solvers.adaptive_IMEX.AdaptiveIMEX method) (opencmp.solvers.adaptive_transient_solvers.adaptive_three_step.AdaptiveThreeStep method) (opencmp.solvers.adaptive_transient_solvers.adaptive_two_step.AdaptiveTwoStep method) (opencmp.solvers.base_solver.Solver method) (opencmp.solvers.transient_multistep.TransientMultiStepSolver method) (opencmp.solvers.transient_RK.TransientRKSolver method)

RK_222() (in module opencmp.solvers.time_integration_schemes) RK_232() (in module opencmp.solvers.time_integration_schemes) run() (in module opencmp.run)

S

save() (opencmp.helpers.saving.SolutionFileSaver method) SBDF() (in module opencmp.solvers.time_integration_schemes) set_boundary_conditions() (opencmp.config_functions.boundary_conditions.BCFunctions method) set_dirichlet_boundary_conditions() (opencmp.config_functions.boundary_conditions.BCFunctions method) set_initial_conditions() (opencmp.config_functions.initial_conditions.ICFunctions method) set_model_functions() (opencmp.config_functions.model_functions.ModelFunctions method) set_ref_solution() (opencmp.config_functions.reference_solutions.RefSolFunctions method) sig() (in module opencmp.helpers.math) signed_area() (in module opencmp.diffuse_interface.mesh_helpers) sol_to_vtu() (in module opencmp.helpers.post_processing) SolutionFileSaver (class in opencmp.helpers.saving) solve() (opencmp.solvers.base_solver.Solver method)

solve_single_step() (opencmp.models.base_model.Model method) (opencmp.models.ins.INS method) (opencmp.models.poisson.Poisson method) (opencmp.models.stokes.Stokes method) solve_stationary_iteration() (opencmp.models.base_model.Model method) (opencmp.models.ins.INS method) (opencmp.models.poisson.Poisson method) (opencmp.models.stokes.Stokes method) Solver (class in opencmp.solvers.base_solver) split_nonconformal_subdomains_2d() (in module opencmp.diffuse_interface.interface) split_nonconformal_subdomains_3d() (in module opencmp.diffuse_interface.interface) StationarySolver (class in opencmp.solvers.stationary) Stokes (class in opencmp.models.stokes)

T

tanh() (in module opencmp.helpers.math) time_derivative_terms() (opencmp.models.base_model.Model method)

TransientMultiStepSolver (class in opencmp.solvers.transient_multistep) TransientRKSolver (class in opencmp.solvers.transient_RK)

U

update_bcs() (opencmp.models.base_model.Model method) update_boundary_conditions() (opencmp.config_functions.boundary_conditions.BCFunctions method) update_gridfunction_from_files() (in module opencmp.helpers.io) update_initial_conditions() (opencmp.config_functions.initial_conditions.ICFunctions method) update_linearization_terms() (opencmp.models.base_model.Model method) (opencmp.models.ins.INS method)

update_model_functions() (opencmp.config_functions.model_functions.ModelFunctions method) update_model_variables() (opencmp.models.base_model.Model method) update_ref_solutions() (opencmp.config_functions.reference_solutions.RefSolFunctions method) update_timestep() (opencmp.models.base_model.Model method)